Ancient Mitogenomes Reveal the Maternal Genetic History of East Asian Dogs

doi:10.1093/molbev/msae062

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	Ancient Mitogenomes Reveal the Maternal Genetic History of East Asian Dogs
	Zhang, Ming 1,2; Song, Yanbo 3; Wang, Caihui 1; Sun, Guoping 4; Zhuang, Lina 5; Guo, Mingjian 5; Ren, Lele 6; Wangdue, Shargan 7; Dong, Guanghui 8; Dai, Qingyan 2; Cao, Peng 2; Yang, Ruowei 2; Liu, Feng 2; Feng, Xiaotian 2; Bennett, E. Andrew 2; Zhang, Xiaoling 2; Chen, Xi9 ; Wang, Fen 3; Luan, Fengshi 3; Dong, Wenbin 10; Lu, Guoquan 3; Hao, Daohua 10; Hou, Hongwei 11; Wang, Hui 11,12; Qiao, Hong 13; Wang, Zhongxin 13; Hu, Xiaojun 13; He, Wei 7; Xi, Lin 14; Wang, Weilin 15; Shao, Jing 14; Sun, Zhouyong 14; Yue, Lianjian 14; Ding, Yan 14; Tashi, Norbu 7; Tsho, Yang 7; Tong, Yan 7; Yang, Yangheshan 16; Zhu, Shilun 2,17; Miao, Bo 2; Wang, Wenjun 2,18; Zhang, Lizhao 2; Hu, Songmei 14,19; Ni, Xijun2,17 ; Fu, Qiaomei2,17
	2024-04-02
发表期刊	MOLECULAR BIOLOGY AND EVOLUTION
ISSN	0737-4038
卷号	41 期号:4 页码:13
通讯作者	Hu, Songmei([email protected]) ; Ni, Xijun([email protected]) ; Fu, Qiaomei([email protected])
摘要	Recent studies have suggested that dogs were domesticated during the Last Glacial Maximum (LGM) in Siberia, which contrasts with previous proposed domestication centers (e.g. Europe, the Middle East, and East Asia). Ancient DNA provides a powerful resource for the study of mammalian evolution and has been widely used to understand the genetic history of domestic animals. To understand the maternal genetic history of East Asian dogs, we have made a complete mitogenome dataset of 120 East Asian canids from 38 archaeological sites, including 102 newly sequenced from 12.9 to 1 ka BP (1,000 years before present). The majority (112/119, 94.12%) belonged to haplogroup A, and half of these (55/112, 49.11%) belonged to sub-haplogroup A1b. Most existing mitochondrial haplogroups were present in ancient East Asian dogs. However, mitochondrial lineages in ancient northern dogs (northeastern Eurasia and northern East Asia) were deeper and older than those in southern East Asian dogs. Results suggests that East Asian dogs originated from northeastern Eurasian populations after the LGM, dispersing in two possible directions after domestication. Western Eurasian (Europe and the Middle East) dog maternal ancestries genetically influenced East Asian dogs from approximately 4 ka BP, dramatically increasing after 3 ka BP, and afterwards largely replaced most primary maternal lineages in northern East Asia. Additionally, at least three major mitogenome sub-haplogroups of haplogroup A (A1a, A1b, and A3) reveal at least two major dispersal waves onto the Qinghai-Tibet Plateau in ancient times, indicating eastern (A1b and A3) and western (A1a) Eurasian origins.
关键词	ancient DNA mitochondrial DNA genetic history east Asia Canis lupus familiaris
DOI	10.1093/molbev/msae062
关键词[WOS]	MITOCHONDRIAL ; ORIGIN ; CAVE ; TOOL
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China[41925009] ; National Natural Science Foundation of China[32100488] ; National Natural Science Foundation of China[41625005] ; National Key R&D Program of China[2022YFE0203800] ; Science and Technology Innovation Team of Shaanxi Province[2024RS-CXTD-74] ; Ministry of Finance of the People's Republic of China[YSBR-019] ; New Cornerstone Science Foundation through the XPLORER PRIZE
项目资助者	National Natural Science Foundation of China ; National Key R&D Program of China ; Science and Technology Innovation Team of Shaanxi Province ; Ministry of Finance of the People's Republic of China ; New Cornerstone Science Foundation through the XPLORER PRIZE
WOS研究方向	Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS类目	Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
WOS记录号	WOS:001198781500002
出版者	OXFORD UNIV PRESS
引用统计
文献类型	期刊论文
条目标识符	http://119.78.100.205/handle/311034/23552
专题	中国科学院古脊椎动物与古人类研究所
通讯作者	Hu, Songmei; Ni, Xijun; Fu, Qiaomei
作者单位	1.Northwest Univ, Sch Culture Heritage, China Cent Asia the Belt & Rd Joint Lab Human & E, Key Lab Cultural Heritage Res & Conservat, Xian, Peoples R China 2.Chinese Acad Sci, Inst Vertebrate Paleontol & Paleoanthropol, Ctr Excellence Life & Paleoenvironm, Key Lab Vertebrate Evolut & Human Origins, Beijing, Peoples R China 3.Shandong Univ, Sch Archaeol, Jinan, Peoples R China 4.Zhejiang Prov Inst Cultural Rel & Archaeol, Hangzhou, Peoples R China 5.Natl Museum China, Beijing, Peoples R China 6.Lanzhou Univ, Sch Hist & Culture, Lanzhou, Peoples R China 7.Tibet Inst Conservat & Res Cultural Rel, Lhasa, Peoples R China 8.Lanzhou Univ, Coll Earth & Environm Sci, Key Lab Western Chinas Environm Syst, Minist Educ, Lanzhou, Peoples R China 9.Nanjing Normal Univ, Dept Cultural Heritage & Museol, Nanjing, Peoples R China 10.Shandong Prov Inst Cultural Rel & Archaeol, Jinan, Peoples R China 11.Gansu Prov Inst Cultural Rel & Archaeol, Lanzhou, Peoples R China 12.Fudan Univ, Fudan Archaeol Sci Inst, Shanghai, Peoples R China 13.Qinghai Prov Cultural Rel & Archaeol Inst, Xining, Peoples R China 14.Shaanxi Acad Archaeol, Xian, Peoples R China 15.Shanxi Univ, Sch Archaeol & Museol, Taiyuan, Peoples R China 16.East China Normal Univ, Sch Ecol & Environm Sci, Shanghai, Peoples R China 17.Univ Chinese Acad Sci, Beijing, Peoples R China 18.Natl Ctr Archaeol, Sci & Technol Archaeol, Beijing, Peoples R China 19.Shandong Univ, Joint Int Res Lab Environm & Social Archaeol, Qingdao, Peoples R China
推荐引用方式 GB/T 7714	Zhang, Ming,Song, Yanbo,Wang, Caihui,et al. Ancient Mitogenomes Reveal the Maternal Genetic History of East Asian Dogs[J]. MOLECULAR BIOLOGY AND EVOLUTION,2024,41(4):13.
APA	Zhang, Ming.,Song, Yanbo.,Wang, Caihui.,Sun, Guoping.,Zhuang, Lina.,...&Fu, Qiaomei.(2024).Ancient Mitogenomes Reveal the Maternal Genetic History of East Asian Dogs.MOLECULAR BIOLOGY AND EVOLUTION,41(4),13.
MLA	Zhang, Ming,et al."Ancient Mitogenomes Reveal the Maternal Genetic History of East Asian Dogs".MOLECULAR BIOLOGY AND EVOLUTION 41.4(2024):13.